Ophthalmology CAD


In Ophthalmology CAD, we group projects that involve image analysis of eye images, as eye fundus images and Optical Coherence Tomography eye images. The three main projects are RetinaCAD, SCREEN-DR and ChoroidCAD.

RetinaCAD is a software tool for the measurement of several biomarkers in the retina, namely the Central Retinal Arteriolar Equivalent (CRAE), the Central Retinal Venular Equivalent (CRVE) and the Arteriolar-to-Venular Ratio (AVR). Other geometric characteristics associated to bifurcations in the blood vessels are also evaluated. To calculate these biomarkers, RetinaCAD starts by identifying important landmarks in the retina, such as the blood vessels and the optic disk, classifies the arteries/veins and measures the claiber of the blood vessels.

Projects

SCREEN-DR
RetinaCAD
ChoroidCAD

Publications

Articles in Journals
Prasanna Porwal, Samiksha Pachade, Manesh Kokare, Girish Deshmukh, Jaemin Son, Woong Bae, Lihong Liu, Jianzong Wang, Xinhui Liu, Liangxin Gao, TianBo Wu, Jing Xiao, Fengyan Wang, Baocai Yin, Yunzhi Wang, Gopichandh Danala, Linsheng He, Yoon Ho Choi, Yeong Chan Lee, Sang Hyuk Jung, Zhongyu Li, Xiaodan Sui, Junyan Wu, Xiaolong Li, Ting Zhou, János Tóth, Agnes Baran, Avinash Kori, Sai Saketh Chennamsetty, Mohammed Safwan, Varghese Alex, Xingzheng Lyu, Li Cheng, Qinhao Chu, Pengcheng Li, Xin Ji, Sanyuan Zhang, Yaxin Shen, Ling Dai, Oindrila Saha, Rachana Sathish, Tânia Melo, Teresa Araújo, Balazs Harangi, Bin Sheng, Ruogu Fang, Debdoot Sheet, András Hajdu, Yuanjie Zheng, Ana Maria Mendonça, Shaoting Zhang, Aurélio C. Campilho, Bin Zheng, Dinggang Shen, Luca Giancardo, Gwenole Quellec, Fabrice Meriaudeau, IDRiD: Diabetic Retinopathy – Segmentation and Grading Challenge, Medical Image Analysis, 101561, 2019. DOI: 10.1007/978-3-030-27272-2_32. Elsevier
Articles in Conference Proceedings
Anupma Sharan, Asim Smailagic, Pedro Costa, Adrian Galdran, Alex Gaudio, Aurélio Campilho, Learned Pre-processing for Automatic Diabetic Retinopathy Detection on Eye Fundus Images, 16th International Conference on Image Analysis and Recognition (ICIAR 2019), August 2019. DOI: 10.1007/978-3-030-27272-2_32. Springer
Qiqi Xiao, Jiaxu Zou, Muqiao Yang, Alex Gaudio, Kris Kitani, Asim Smailagic, Pedro Costa, Min Xu, Improving Lesion Segmentation for Diabetic Retinopathy Using Adversarial Learning, 16th International Conference on Image Analysis and Recognition (ICIAR 2019), August 2019. DOI: 10.1007/978-3-030-27272-2_29. Springer
Pedro Costa, Teresa Araújo, Guilherme Aresta, Adrian Galdran, Ana Maria Mendonça, Asim Smailagic, Aurélio Campilho, EyeWeS: Weakly Supervised Pre-Trained Convolutional Neural Networks for Diabetic Retinopathy Detection, 16th International Conference on Machine Vision Applications (MVA 2019), May 2019. DOI: 10.23919/MVA.2019.8757991. MVA
Adrian Galdran, Maria Inês Meyer, Pedro Costa, Ana Maria Mendonça, Aurélio Campilho, Uncertainty-aware artery/vein classification on retinal images, IEEE International Symposium on Biomedical Imaging (ISBI), Venice, Italy, 8-11 April 2019. DOI: 10.1109/ISBI.2019.8759380. IEEE
Carlos A. Ferreira, Susana Penas, Jorge Silva, Ana Maria Mendonça, Quantitative Assessment of Central Serous Chorioretinopathy in Angiographic Sequences of Retinal Images, 6th IEEE Portuguese Meeting on Bioengineering (ENBENG 2019), February 2019. DOI: 10.1109/ENBENG.2019.8692445. IEEE
Diego Wanderley, Teresa Araújo, Catarina Carvalho, Carolina Maia, Susana Penas, Ângela Carneiro, Ana Maria Mendonça, Aurélio Campilho, Analysis of the performance of specialists and an automatic algorithm in retinal image quality assessment, 6th IEEE Portuguese Meeting on Bioengineering (ENBENG 2019), February 2019. DOI: 10.1109/ENBENG.2019.8692506. IEEE
Articles in Journals
Hajj, Mathieu Lamard, Pierre-Henri Conze, Soumali Roychowdhury, Xiaowei Hu, Gabija Maršalkaitė, Odysseas Zisimopoulos, Muneer Ahmad Dedmari, Fenqiang Zhao, Jonas Prellberg, Manish Sahu, Adrian Galdran, Teresa Araújo, Duc My Vo, Chandan Panda, Navdeep Dahiya, Satoshi Kondo, Zhengbing Bian, Arash Vahdat, Jonas Bialopetravičius, Evangello Flouty, Chenhui Qiu, Sabrina Dill, Anirban Mukhopadhyay, Pedro Costa, Guilherme Aresta, Senthil Ramamurthy, Sang-Woong Lee, Aurélio Campilho, Stefan Zachow, Shunren Xia, Sailesh Conjeti, Danail Stoyanov, Jogundas Armaitis, Pheng-Ann Heng, William G. Macready, Béatrice Cochener, Gwenolé Quellec, CATARACTS: Challenge on Automatic Tool Annotation for cataRACT surgery,Medical Image Analysis,vol 52, 2018. Elsevier
Joaquim de Moura, Jorge Novo, Susana Penas, Marcos Ortega, Jorge Silva, Ana Maria Mendonça, Automatic Characterization of the Serous Retinal Detachment Associated with the Subretinal Fluid Presence in Optical Coherence Tomography Images,Procedia Computer Science,Volume 126,2018,Pages 244-253. Elsevier
Teresa Araújo, Ana Maria Mendonça, Aurélio Campilho, Parametric Model Fitting-based Approach for Retinal Blood Vessel Caliber Estimation in Eye Fundus Images,PLOS ONE,vol 13. issue 4, 2018. PlosOne
Pedro Costa, Adrian Galdran, Asim Smailagic and Aurélio Campilho, A Weakly-Supervised Framework for Interpretable Diabetic Retinopathy Detection on Retinal Images , IEEE Access, vol. PP, no. 99, pp. 1-1, 2018. IEEE
Articles in Conference Proceedings
Asim Smailagic, Pedro Costa, Hae Young Noh, Devesh Walawalkar, Kartik Khandelwal, Adrian Galdran, Mostafa Mirshekari, Jonathon Fagert, Susu Xu, Pei Zhang, Aurélio Campilho, MedAL: Accurate and Robust Deep Active Learning for Medical Image Analysis, 2018 17th IEEE International Conference on Machine Learning and Applications (ICMLA). IEEE arXiv
Teresa Araújo, Guilherme Aresta, Adrian Galdran, Pedro Costa, Ana Maria Mendonça, Aurélio Campilho, UOLO - Automatic Object Detection and Segmentation in Biomedical Images, 4th Workshop on Deep Learning in Medical Image Analysis. Springer arXiv
Adrian Galdran, P. Costa, A. Bria, T. Araújo, A. M. Mendonça, A. Campilho, A No-Reference Retinal Vessel Tree Segmentation Quality Metric, MICCAI2018, 2018. Springer
Maria Ines Meyer, Adrian Galdran, Ana Maria Mendonça, Aurélio Campilho, A Pixel-wise Distance Regression Approach for Joint Retinal Optical Disc and Fovea Detection., MICCAI2018, 2018. Springer
Tânia Melo, Ana Maria Mendonça and Aurelio Campilho, Creation of Retinal Mosaics for Diabetic Retinopathy Screening: a Comparative Study, 15th International Conference on Image Analysis and Recognition, ICIAR2018, 2018. ICIAR
Maria Ines Meyer, Adrian Galdran, Pedro Costa, Ana Maria Mendonça and Aurélio Campilho, Deep Convolutional Artery/Vein Classification of Retinal Vessels, 15th International Conference on Image Analysis and Recognition, ICIAR2018, 2018. ICIAR
Adrian Galdran, Teresa Araújo, Ana Mendonça and Aurélio Campilho, Retinal Image Quality Assessment by Mean-Subtracted Contrast-Normalized Coefficients, VipIMAGE 2017, ECCOMAS 2017 - Lecture Notes in Computational Vision and Biomechanics, vol 27. Springer pp. 844-853, 2018. VipIMAGE
Simão P. Faria, Susana Penas, Luís Mendonça, Jorge A. Silva and Ana Maria Mendonça, 3D Mapping of Choroidal Thickness from OCT B-scans, VipIMAGE 2017, ECCOMAS 2017 - Lecture Notes in Computational Vision and Biomechanics, vol 27. Springer pp. 834-843, 2018. VipIMAGE
Short Papers and Abstracts
Luis Mendonca, Simão Faria, Susana Penas, Jorge Silva, Ana Maria Mendonça, Calculation and mapping of choroidal thickness in OCT images, Investigative Ophthalmology & Visual Science.
Articles in Journals
Pedro Costa, Adrian Galdran, Maria Ines Meyer, Meindert Niemeijer, Michael Àbramoff, Ana Maria Mendonça and Aurélio Campilho, End-to-end Adversarial Retinal Image Synthesis, IEEE Transactions on Medical Imaging, vol PP, issue 99, 2017. IEEE
Pedro Costa and Aurélio Campilho, Convolutional bag of words for diabetic retinopathy detection from eye fundus images, IPSJ Transactions on Computer Vision and Applications, vol 9, 2017. Springer
Articles in Conference Proceedings
Pedro Costa and Aurélio Campilho and Bryan Hooi and Asim Smailagic and Kris Kitani and Shenghua Liu and Christos Faloutsos and Adrian Galdran, EyeQual: Accurate, Explainable, Retinal Image Quality Assessment, 2017 16th IEEE International Conference on Machine Learning and Applications (ICMLA), pp. 323-330, 2017. IEEE
Benedetta Savelli, Alessandro Bria, Claudio Marrocco, Mario Molinara, Francesco Tortorella, Adrian Galdran and Aurélio Campilho, Illumination correction by dehazing for retinal vessel segmentation, IEEE CBMS2017 – 30th International Symposium on Computer-based Medical Systems, 2017. IEEE
Pedro Costa, Adrian Galdran, Maria Ines Meyer, Ana Maria Mendonça and Aurélio Campilho, Adversarial Synthesis of Retinal Images from Vessel Trees, ICIAR 2017 – International Conference on Image Analysis and Recognition LNCS 10317, pp. 516-523, 2017. ICIAR
Maria Ines Meyer, Pedro Costa, Adrian Galdran, Ana Maria Mendonça and Aurélio Campilho, A deep neural network for vessel tree segmentation of Scanning Laser Ophthalmoscopy Images, ICIAR 2017 – International Conference on Image Analysis and Recognition LNCS 10317, pp. 507-515, 2017. ICIAR
Beatriz Remeseiro, Ana Maria Mendonça and Aurélio Campilho, Objective Quality Assessment of Retinal Images Based on Texture Analysis, Int. Joint Conference on Neural networks (IJCNN2017), May 2017.
Pedro Costa and Aurélio Campilho, Convolutional Bag of Words for Diabetic Retinopathy Detection from Eye Fundus Images, MVA 2017, May 2017.
Ana Maria Mendonça, Beatriz Remeseiro, Behdad Dashtbozorg and Aurélio Campilho, Automatic and semi-automatic approaches for arteriolar-to-venular computation in retinal photographs, SPIE Medical Imaging, Orlando, USA, pages 101341L-101341L-7, 2017. SPIE
Teresa Araújo, Ana Maria Mendonça and Aurélio Campilho, Estimation of retinal vessel caliber using model fitting and random forests, SPIE Medical Imaging, Orlando, USA, pages 101341K-101341K-8, 2017. SPIE Video
Pedro Costa, Adrian Galdran, Maria Ines Meyer, Michael David Abràmoff, Meindert Niemeijer, Ana Maria Mendonça, Aurélio Campilho, Towards Adversarial Retinal Image Synthesis, arXiv:1701.08974v1, January 2017. Code arXiv Demo
Short Papers and Abstracts
Simão P. Faria, Susana Penas, Luís Mendonça, Jorge A. Silva and Ana Maria Mendonça, Estimation of choroidal thickness in OCT images, pp 68-70, RECPAD 2016 – 22nd Edition of the Portuguese Conference on Pattern Recognition, 2016.
Teresa Araújo, Ana Maria Mendonça and Aurélio Campilho, Vessel width estimation in eye fundus images, pp 87-88, RECPAD 2016 – 22nd Edition of the Portuguese Conference on Pattern Recognition, 2016.
Pedro Costa, Aurélio Campilho, Convolutional Bag of Words for Diabetic Retinopathy Detection, Bioimaging 2016, pp 32, 2016 (oral presentation)
Articles in Journals
Behdad Dashtbozorg, Ana Maria Mendonça and Aurelio Campilho, Optic Disc Segmentation Using the Sliding Band Filter, Computers in Biology and Medicine, vol. 56, pp 1-12, 2015 (Esteemed Paper for 2015, top 5%). SDirect
Articles in Conference Proceedings
Behdad Dashtbozorg, Ana Maria Mendonca and Aurelio Campilho, Assessment of Retinal Vascular Changes through Arteriolar-to-Venular Ratio Calculation, Image Analysis and Recognition, Lecture Notes in Computer Science 2015, LNCS 9164, pp. 335-343, 2015. Springer
Articles in Journals
Behdad Dashtbozorg, Mendonça Ana Maria, Aurélio Campilho, An Automatic Graph-Based Approach for Artery/Vein Classification in Retinal Images , IEEE TIP - IEEE Transactions on Image Processing, vol.23, no.3, pp.1073-1083, March, 2014. IEEE
Articles in Conference Proceedings
F Sattar, Aurélio Campilho and Mohamed Kamel, Optic disk localization for gray-scale retinal images based on patch filtering , LNCS - Lecture Notes in Computer Science, vol.8815, pp.277-284, 2014. Springer
Behdad Dashtbozorg, Ana Maria Mendonça, Susana Penas and Aurélio Campilho, Computer-aided Diagnosis System for the Assessment of Retinal Vascular Changes, Miccai 2014 - MICCAI 2014, pp.9-16, Boston, USA, 2014.
Behdad Dashtbozorg, Ana Maria Mendonça, Susana Penas, Aurélio Campilho, RetinaCAD, a system for the assessment of retinal vascular changes, EMBC 2014 - The 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, pp.6328-6331, Chicago, 2014. IEEE
Behdad Dashtbozorg, Ana Maria Mendonça and Aurélio Campilho, Assessment of vascular changes in retinal images, Proceedings IEEE MeMe 2014 - International Symposium on Medical Measurements and Applications, pp.19-22, 2014. IEEE
Short Papers and Abstracts
Behdad Dashtbozorg, Ana Maria Mendonça and Aurélio Campilho, Artery/Vein Classification in Retinal Images, 3rd International Symposium in Applied Bioimaging | Life in a Pixel, pp.32, 2014.
Behdad Dashtbozorg, Ana Maria Mendonça, Susana Penas, Jorge Polónia and Aurélio Campilho, RetinaCAD - Retinal Computer-Aided Diagnosis System, RECPAD 2014, pp.46-47, 2014.